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Jump to section	PCA	Population structure	Phylogeny tree	Nucleotide diversity
Jump to section	Decay of linkage disequilibrium

PCA

PC1 and PC2 clusters from each genus

PC1 and PC3 clusters from each genus

Population structure

E. quadrinervis Kuntze
M. floridulus Warb.
M. sinensis Anderss
E. bengalense
E. munja
S. arundinaceum Retz.
N. porphyrocoma Bor.
E. rockii Keng
S. spontaneum L.
S. sinense Roxb.
S. barberi Jeswiet
S. robbustum Brandes et Jeswiet
S. officinarum L.
E. fulvus Ness

Yun nan
Si chuan
Gui zhou
Guang xi
Hai nan
Guang zhou
Jiang xi
Fu jian
Hu nan
America
India
Tibet
Hu bei
Guang dong
Shan xi
Myanmar
Nepal
New Guinea
He nan
null
Brazil
Vietnam
Australia

Which K

Phylogeny tree

Nucleotide diversity

ZMS

GZS

BM

MANG

HBW

Decay of linkage disequilibrium

Contact Fusheng Li， E-mail: Lfs810@sina.com Sugarcane Research Institute of Yunnan Agricultural University, Kunming, 650201, China